PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37971.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 335aa    MW: 35634.7 Da    PI: 6.5696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37971.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000272753121254
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A eYIk L
  MLOC_37971.1 275 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 312
                   677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-9273318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-4273317No hitNo description
Gene3DG3DSA:4.10.280.107.3E-7277316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAEEWWSGSQ RSHGTSACSP APLMDTGHAA TCGWTSPAAE STSSITFQDP HRSSSTIIHQ  60
PSSDAASSLG DAHMDWTHAF LSGRSDASFQ AVLQDDMPAS MTTRPLFRAQ QPAVDEAVMS  120
NPFRDMSHSF SLLEHVPAAS SPYGTAPLQA MFDSTGASHN VSVLGECRSS TSYDGTAAMQ  180
LNQAATQMLG GGAQLQYLSG SGSYLPFGGA PLSSQLLLQA LQPKTSYSSS SNTLMAKSAE  240
HACSPPARKS EPDSPAAAKR PRIEAPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS  300
VLHEANEYIK FLHDQVAVSV PNDTPALLRR HFLSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181117.10.0transcription factor UNE12-like isoform X2
TrEMBLA0A287LSH30.0A0A287LSH3_HORVV; Uncharacterized protein
STRINGMLOC_37971.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.12e-30bHLH family protein