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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_37844.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
NAC |
| Protein Properties |
Length: 217aa MW: 25165.2 Da PI: 6.759 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_37844.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 176 | 1.1e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeelv++yLk+kv+g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++
MLOC_37844.1 6 LPPGFRFHPTDEELVNYYLKRKVHGQSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRSINY- 100
79****************************.99**************84335556888*************************************9. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +g+kktLvfy+grap+g +++Wvmheyr+
MLOC_37844.1 101 QKRSIGMKKTLVFYQGRAPQGIRSNWVMHEYRI 133
9999***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MAPVGLPPGF RFHPTDEELV NYYLKRKVHG QSIELDIIPE VDLYKCEPWE LAEKSFLPSR 60
DPEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRSINY QKRSIGMKKT LVFYQGRAPQ 120
GIRSNWVMHE YRIEESECNN TMGVQDSYAL CRVFKKNVPA GEFEKQGECS SSQAKGNQEQ 180
VTDFEEAGES SAANENDKDN SWMQFIVEDL WCSNKTK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_B | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_C | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_D | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_A | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_B | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_C | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_D | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
| 3ulx_A | 7e-56 | 2 | 156 | 11 | 168 | Stress-induced transcription factor NAC1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC137596 | 1e-50 | AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence. |
| GenBank | AP005564 | 1e-50 | AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence. |
| GenBank | AP014965 | 1e-50 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 1e-50 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
