PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_37841.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | SBP | ||||||||
Protein Properties | Length: 268aa MW: 29514.8 Da PI: 6.8621 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 68.4 | 1.4e-21 | 2 | 39 | 41 | 78 |
EE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+ MLOC_37841.2 2 RFCQQCSRFHLLTEFDEAKRSCRKRLDGHNRRRRKPQP 39 9**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03110 | 5.5E-14 | 1 | 36 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.392 | 1 | 37 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 8.2E-11 | 1 | 24 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.06E-19 | 2 | 42 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MRFCQQCSRF HLLTEFDEAK RSCRKRLDGH NRRRRKPQPD PMNSASFMTS QQGTRFPSFP 60 TPRPEQNWPG IIKTEENPYY THQLPLGISN RHHFGGSTST FAKEGRRFPF LQEGEINFAT 120 GVALEPAVCQ PLLKTVAPPE SSSSSSKMFS DGLTPVLDSD CALSLLSAPA NSSGIDVGQM 180 VQQTEHIPIA QPLFSNLQQF SSSSWFSRTQ ASTGTVSATG FSCPVVENEQ LNNVLTSDNN 240 DLNYNGIFHV GGEGSSDGAP PSLPFPWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-13 | 2 | 36 | 50 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 36 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_37841.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374598 | 0.0 | AK374598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070D10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194874.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 1e-117 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | F2EEM2 | 0.0 | F2EEM2_HORVV; Predicted protein | ||||
STRING | MLOC_37841.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-21 | SBP family protein |