PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37666.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 405aa    MW: 42556.4 Da    PI: 7.6208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37666.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.9e-053343711254
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +++eYIk L
  MLOC_37666.1 334 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 371
                   677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.011322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-9332379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-5332374No hitNo description
Gene3DG3DSA:4.10.280.102.6E-7336374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGDHQLMYAA PAMHNGGGGG AVSHSHGMWW NSNTTAVPAA ACSTELAGFN TWPAAQLAAG  60
GYDMAAADGG KAKSCTTTAS SESPGNNSSV TFQETASISD PAAGGAAGFT DWNNPYMSNG  120
GGGNMHGFLQ VGDHHDMSSR TDQQSHMNVS SLMNDASPNN LDLALQGHHQ QHQHAGDHRH  180
QQHLLLSSLG APELLLSPSS PYGFQSSSLL RSLLEPMAKP APAAAGIQQY QYQQMGGQAG  240
VREPLQFTND AAFWNPSAGF GMAMPAPAAA DQTSVRSVKR PSSAPRGASL ALKTVSLEGV  300
GDSSSIVSKK ASSEPAFKKP RMGTPSPMPT FKVRKEKLGD RITALQQLVS PFGKTDTASV  360
LHETIEYIKF LHDQAGVSSA CAKYHIHPLI MASGARTHGL YRFPH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37666.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695050.0AK369505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092J07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190605.10.0transcription factor bHLH112-like isoform X1
TrEMBLF2E0340.0F2E034_HORVV; Predicted protein
STRINGMLOC_37666.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.23e-28bHLH family protein