PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_37511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 26655.6 Da PI: 6.4143 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.8 | 3.4e-07 | 202 | 243 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L+el+P+ K++ +++L kA+ Y+k +q MLOC_37511.1 202 AKTRRERIGERLRVLQELVPNG-----SKVDMVTMLDKAITYVKFMQ 243 589******************5.....5****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-11 | 192 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.119 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-9 | 193 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.41E-10 | 199 | 246 | No hit | No description |
SMART | SM00353 | 7.4E-9 | 199 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-4 | 203 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MALVGQPATF CYDGFVGDGA PAFMDVGFGY GYDHHSHLLE EECLLGSHAH GWELPTGNLG 60 AGAPGSINTF VGHDVGWTRP AGRMSSSSSV LAFDSQGEDN CAAATWMDMD AVDQLSYSPS 120 TAPAAAAPAG SFSFEGCGGN DRTAASPSHK RPRAHAEAQR GTDQESTTPP KKQCGGDRKS 180 AVKPTKTSAT TSSTKDPQSD AAKTRRERIG ERLRVLQELV PNGSKVDMVT MLDKAITYVK 240 FMQLQLTVHI Y |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_37511.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158740.1 | 1e-143 | transcription factor bHLH69-like | ||||
TrEMBL | A0A287WCB0 | 0.0 | A0A287WCB0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_37511.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 3e-23 | ROOT HAIR DEFECTIVE6 |