PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37446.1
Common NameLUX
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 274aa    MW: 28842 Da    PI: 7.974
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37446.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.3e-29129181255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   +rl+Wtp+LH+rFve+v++L G++ A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  MLOC_37446.1 129 ARLVWTPQLHKRFVEVVAHL-GIKSAVPKTIMQLMNVEGLTRENVASHLQKYRL 181
                   79******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.297125184IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-30126186IPR009057Homeodomain-like
SuperFamilySSF466896.27E-19126185IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-24129181IPR006447Myb domain, plants
PfamPF002492.6E-8131180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGEEAGGYGF DFGGYGGYEG RVTEWETGLP GCDELTPLSQ PLVPPGLAAA FRIPPEPGRT  60
LLDVHRASSA TVSRLRSASS SPSSGNAPAT GGSFPSFPGK SSAAGDDNNN NSSAESAGEK  120
SAAAATKRAR LVWTPQLHKR FVEVVAHLGI KSAVPKTIMQ LMNVEGLTRE NVASHLQKYR  180
LYVKRMQGLS NEGPSASDHI FASTPVPHSL REPQVPVPHA AAMAPAMYHH HPAPMGGVAA  240
GHGGYYQQQH SAHAVYNGYG GGVSSYPHYH HGDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-32128184157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37446.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575050.0AK357505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A13.
GenBankKC6682590.0KC668259.1 Hordeum vulgare haplotype 1 LUX (LUX) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165352.11e-141transcription factor PCL1-like
SwissprotQ94DH31e-84PCL1_ORYSJ; Transcription factor PCL1
TrEMBLF2D0U80.0F2D0U8_HORVV; Predicted protein
TrEMBLS5UFU60.0S5UFU6_HORVU; LUX
STRINGMLOC_37446.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.22e-47G2-like family protein
Publications ? help Back to Top
  1. Campoli C, et al.
    HvLUX1 is a candidate gene underlying the early maturity 10 locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways.
    New Phytol., 2013. 199(4): p. 1045-59
    [PMID:23731278]