PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37432.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 377aa    MW: 42029 Da    PI: 7.2876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37432.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001386108323
                   ET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                   C+  +Cgk+F +   L++H  +H
  MLOC_37432.2  86 CSydNCGKTFVDVAALRKHAHVH 108
                   88889**************9887 PP
2zf-C2H220.41.3e-06113137123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   y+C+   Cgk F ++s LkrH  tH
  MLOC_37432.2 113 YVCQepGCGKKFVDSSKLKRHHLTH 137
                   99********************999 PP
3zf-C2H219.52.6e-06143167123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   ++Cp   Cgk Fs   nL+ H++tH
  MLOC_37432.2 143 FVCPhpGCGKAFSLDFNLRAHLKTH 167
                   89**********************9 PP
4zf-C2H212.50.00045173197123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   + Cp   Cgk+F++   Lk Hi+tH
  MLOC_37432.2 173 HICPfpACGKRFTSDFKLKCHIKTH 197
                   5799999*****************9 PP
5zf-C2H213.40.00023243268123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   y+Cp   Cgk + + + L+ H +t H
  MLOC_37432.2 243 YVCPyeGCGKAYIHGYKLNLHFKTqH 268
                   99********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-1280110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09484113IPR007087Zinc finger, C2H2
SMARTSM003550.01484108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086108IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-887137No hitNo description
Gene3DG3DSA:3.30.160.602.4E-13111135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.7E-4113137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.129113142IPR007087Zinc finger, C2H2
PROSITE patternPS000280115137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-12124176No hitNo description
Gene3DG3DSA:3.30.160.604.0E-18136170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.884143172IPR007087Zinc finger, C2H2
SMARTSM003550.0011143167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-7171197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.91173202IPR007087Zinc finger, C2H2
SMARTSM003550.073173197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175197IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-7176197No hitNo description
Gene3DG3DSA:3.30.160.603.6E-9236266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.08E-7238266No hitNo description
PROSITE profilePS501579.224243273IPR007087Zinc finger, C2H2
SMARTSM003550.023243268IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MQILAYLILN HGADFTLSSV YSWLLPPARL SRLCDFLHRL IIGGWLPRNP CAEDVYRNLK  60
ESGGGVQELE AQPRKVEPAT EILFLCSYDN CGKTFVDVAA LRKHAHVHGE RQYVCQEPGC  120
GKKFVDSSKL KRHHLTHTGQ KDFVCPHPGC GKAFSLDFNL RAHLKTHAVE NYHICPFPAC  180
GKRFTSDFKL KCHIKTHEKT GSPIAVQHTP PAEKPQNTIK PSIQATPKPS APTPPSFSSE  240
RPYVCPYEGC GKAYIHGYKL NLHFKTQHPE HNQEGNGRIA TPAAEYNYAD AGDIAPNPKR  300
SKTNQAHRAP PSNAYNVKVS SRMGVDTSGV KNQWPGKGMY DDDSEETEED PGGNNVQDGW  360
RYGNQNADDE ETEEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34761991119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37432.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591910.0AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180408.10.0uncharacterized zinc finger protein At4g06634-like
TrEMBLF2D5N10.0F2D5N1_HORVV; Predicted protein
STRINGMLOC_37432.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.26e-84C2H2 family protein