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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MLOC_37086.2 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
B3 |
| Protein Properties |
Length: 229aa MW: 25678.2 Da PI: 6.363 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_37086.2 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 46.3 | 7.7e-15 | 125 | 211 | 3 | 87 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
k+lt+sdv + gr+vlpkk ae+ + ++ ++ l++ d +W++k+++ ++ks++y+l ++eFvk +gL++gD ++++ ++
MLOC_37086.2 125 KELTKSDVANVGRIVLPKKDAEASlpPLCERDPVILQMDDmVLPVTWKFKYRFwpNNKSRMYILD-STSEFVKTHGLQAGDALIIY--KN 211
899******************98888666666766777775555*******99777777777777.9****************998..44 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MLNKNAYSYY PAPNQEHTHP FSLDNNQAKD PGSIPNFGIE SFNTTSLAPN MSAHMPPMEG 60
PLSTKEPEAS EDMPARVVAI KDERDARNGI ELKCETVDAL PELKQGHESC ATKFNSGEYQ 120
VILRKELTKS DVANVGRIVL PKKDAEASLP PLCERDPVIL QMDDMVLPVT WKFKYRFWPN 180
NKSRMYILDS TSEFVKTHGL QAGDALIIYK NPVPGKYIVR GEKAIQQTN
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j9c_A | 4e-33 | 112 | 218 | 2 | 108 | B3 domain-containing transcription factor LEC2 |
| 6j9c_D | 4e-33 | 112 | 218 | 2 | 108 | B3 domain-containing transcription factor LEC2 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK373902 | 0.0 | AK373902.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046N18. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Kobayashi T, et al.
The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.
Plant J., 2009. 60(6): p. 948-61
[PMID:19737364] - Kobayashi T, et al.
The spatial expression and regulation of transcription factors IDEF1 and IDEF2.
Ann. Bot., 2010. 105(7): p. 1109-17
[PMID:20197292] - Kobayashi T, et al.
The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status.
Plant J., 2012. 69(1): p. 81-91
[PMID:21880076] - Itai RN,Ogo Y,Kobayashi T,Nakanishi H,Nishizawa NK
Rice genes involved in phytosiderophore biosynthesis are synchronously regulated during the early stages of iron deficiency in roots.
Rice (N Y), 2013. 6(1): p. 16
[PMID:24280375] - Kobayashi T,Nishizawa NK
Iron sensors and signals in response to iron deficiency.
Plant Sci., 2014. 224: p. 36-43
[PMID:24908504] - Kobayashi T,Nakanishi Itai R,Nishizawa NK
Iron deficiency responses in rice roots.
Rice (N Y), 2014. 7(1): p. 27
[PMID:26224556] - Tan S, et al.
CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.
Sci Rep, 2016. 6: p. 25485
[PMID:27137867] - Kobayashi T, et al.
Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.
Plant Mol. Biol., 2016. 91(4-5): p. 533-47
[PMID:27143046]
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