PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRAS

Protein Properties

Length: 548aa MW: 60953.9 Da PI: 6.1647

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_36533.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	411.7	6.9e-126	180	547	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++++++c +av+++d +q l+++l +l+s +gdpmqRl ay++e+L arl+ ++s+lyk+l+++e + sse +++++l+ e++P++kf+++ MLOC_36533.2 180 LKQVIIACGKAVAENDI-YTQVLISELGQLVSVSGDPMQRLGAYILEGLVARLSFTGSRLYKSLKCKEPT---SSELMSYMHLLCEICPFYKFGYMS 272 57899******9876.68*********************************************9...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aN aI ea++ge+ +HiiDf+i qG QW++++qaLa+Rp+gpp+lRiTg+++++s + l +g +L+++ ++ g+pfefn+ v+ + +++ l+ MLOC_36533.2 273 ANGAIAEAIKGENLIHIIDFQIAQGSQWITIIQALAARPGGPPRLRITGIDDSNSAyaRGGGLDMVGTKLHNVSASYGLPFEFNA-VHAASHEVYLQ 368 ************************************************988899999********************.688899999 PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+++pgE+++Vn+++qlh+++desvs+e++rd+++++vkslsPkvv++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ ri+ E+++ MLOC_36533.2 369 HLDIRPGEVIVVNFAYQLHHTPDESVSMENHRDRIVRMVKSLSPKVVTLVEQESNTNT-PFFPRYLETLDYYTAMFESIDVALPRDDKRRISTEQHC 464 ******************************************************75.7889****************************** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++r+ivn++acegaer+erhe ++kW+ r+ +aGF+p+pls+ +++++k+ll+ ++s yr+ee++g l+lgWk+r Lv+ SaW MLOC_36533.2 465 VARDIVNLIACEGAERVERHEVFGKWKTRFAMAGFRPYPLSSVVNNTIKTLLNSYHSC-YRLEERDGVLFLGWKSRVLVVSSAW 547 ****************************************************55.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.422	154	529	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-123	180	547	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MSHKVAITSM SAKASERTYR CSDDSQMAYY NNSVPLAENG RFYMMQNQLD AHYTSSGDGS 60 QKISSNPQIF EAQYCTLESS SANGTYPTQS STSSHSISPI SGSPLSQHDS YSYHTYDSPP 120 TVSCVTEIPD LQSKLKELEN AILGPELDIA SDSPESLLQA NNPLKQDDWR QLLGINTGDL 180 KQVIIACGKA VAENDIYTQV LISELGQLVS VSGDPMQRLG AYILEGLVAR LSFTGSRLYK 240 SLKCKEPTSS ELMSYMHLLC EICPFYKFGY MSANGAIAEA IKGENLIHII DFQIAQGSQW 300 ITIIQALAAR PGGPPRLRIT GIDDSNSAYA RGGGLDMVGT KLHNVSASYG LPFEFNAVHA 360 ASHEVYLQHL DIRPGEVIVV NFAYQLHHTP DESVSMENHR DRIVRMVKSL SPKVVTLVEQ 420 ESNTNTPFFP RYLETLDYYT AMFESIDVAL PRDDKRRIST EQHCVARDIV NLIACEGAER 480 VERHEVFGKW KTRFAMAGFR PYPLSSVVNN TIKTLLNSYH SCYRLEERDG VLFLGWKSRV 540 LVVSSAWC

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MSHKVAITSM SAKASERTYR CSDDSQMAYY NNSVPLAENG RFYMMQNQLD AHYTSSGDGS  60
QKISSNPQIF EAQYCTLESS SANGTYPTQS STSSHSISPI SGSPLSQHDS YSYHTYDSPP  120
TVSCVTEIPD LQSKLKELEN AILGPELDIA SDSPESLLQA NNPLKQDDWR QLLGINTGDL  180
KQVIIACGKA VAENDIYTQV LISELGQLVS VSGDPMQRLG AYILEGLVAR LSFTGSRLYK  240
SLKCKEPTSS ELMSYMHLLC EICPFYKFGY MSANGAIAEA IKGENLIHII DFQIAQGSQW  300
ITIIQALAAR PGGPPRLRIT GIDDSNSAYA RGGGLDMVGT KLHNVSASYG LPFEFNAVHA  360
ASHEVYLQHL DIRPGEVIVV NFAYQLHHTP DESVSMENHR DRIVRMVKSL SPKVVTLVEQ  420
ESNTNTPFFP RYLETLDYYT AMFESIDVAL PRDDKRRIST EQHCVARDIV NLIACEGAER  480
VERHEVFGKW KTRFAMAGFR PYPLSSVVNN TIKTLLNSYH SCYRLEERDG VLFLGWKSRV  540
LVVSSAWC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-59	182	547	6	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_36533.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252567	0.0	AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBank	AK360913	0.0	AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180371.1	0.0	scarecrow-like protein 21
Refseq	XP_020180372.1	0.0	scarecrow-like protein 21
Refseq	XP_020180373.1	0.0	scarecrow-like protein 21
Swissprot	Q8GVE1	0.0	CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBL	M0VQY1	0.0	M0VQY1_HORVV; Uncharacterized protein
STRING	Traes_5BL_700283665.2	0.0	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Tanabe S, et al. The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23. Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51 [PMID:26287768]