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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_36501.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 22970.9 Da PI: 6.5175 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.9 | 1e-15 | 8 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk...kvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+ F+Pt elv++yL +++ ++ +++ vd++++ P++Lp + + + w +fF+ + + + ++ + g W g +k+ + MLOC_36501.1 8 AGYVFQPTGRELVDHYLIPRAGLGGdiFPG-LIVEGVDVLSLRPRELPFspdHKRDYGEVWgFFFAAKIAGE---TCPTP-GAGGCWVRYGPEKAYY 99 799***************998777633344.459999**********9534322233457766666654433...23333.458************* PP NAM 94 sk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + ++e+v ++ ++++ ++ + g+ t+W m+eyrl MLOC_36501.1 100 GEgGREVVAFRRRFAYHftWNDGEVGSPTRWRMKEYRL 137 996677899*******96556889999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-19 | 3 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.251 | 6 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-11 | 8 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MANPNLGAGY VFQPTGRELV DHYLIPRAGL GGDIFPGLIV EGVDVLSLRP RELPFSPDHK 60 RDYGEVWGFF FAAKIAGETC PTPGAGGCWV RYGPEKAYYG EGGREVVAFR RRFAYHFTWN 120 DGEVGSPTRW RMKEYRLNRD AAAFRSAHPG PEAPGVVFVV HKVYRKPMIP QPPPSDSSSS 180 EEEDSEHYIV DPRLDEIMRK LSEGN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_36501.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158486.1 | 9e-97 | NAC transcription factor NAM-B2-like | ||||
TrEMBL | M0VQU2 | 1e-148 | M0VQU2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_36501.1 | 1e-149 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12891 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02230.1 | 7e-09 | NAC domain containing protein 4 |