PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36423.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 419aa    MW: 44655.1 Da    PI: 6.5585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36423.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14229275455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+Y+k+ q
  MLOC_36423.4 229 DHIMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVKYVKEQQ 275
                   699************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.618225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11229275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16229284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-17229284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-15230279No hitNo description
SMARTSM003533.6E-15231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MHKSVRVDWD RTHPNRISAD FGWRLLREVE YVSMQSIFWS LGSPSSSHQA FDPMYQLEAM  60
DDSSLFMQWA VDTLQHEHPP APAAAYAGGG TFPSLEELRR SALQHGTAQD GHRHLAADSW  120
SSGDSAGGGH ENTSAAVVEN DVWSSNSAKC ATACSVGSSN HLPMSWNFTS ALAQPSNEAP  180
AAAAPPSGAH DGPGVTVPEQ AHVSAPTSRR ASAAKGAARA AGHTPYAQDH IMAERKRREK  240
INRRFIELST VIPGLKKMDK ATILSDAVKY VKEQQEKLKA LEDRSLRSVA VESVVLVKKK  300
SRTAAAAPED DCPSPSAGAV AVSTTTTTTT GGSALPEIEA RITESNVMVR IHCEDSKGVL  360
VRLLAEVEGL HLSITHANAI QFPACTVIIT VMAKVDDGFS VTAEDIIAKV EAALPAPTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238ERKRRE
2234239RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36423.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646670.0AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175438.11e-178transcription factor NAI1-like
TrEMBLM0VQH30.0M0VQH3_HORVV; Uncharacterized protein
STRINGMLOC_36423.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-38bHLH family protein