PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36423.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 386aa    MW: 40616.5 Da    PI: 6.3436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36423.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14196242455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+Y+k+ q
  MLOC_36423.3 196 DHIMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVKYVKEQQ 242
                   699************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.618192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-17196251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16196251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-12196242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-15197246No hitNo description
SMARTSM003533.6E-15198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MQSIFWSLGS PSSSHQAFDP MYQLEAMDDS SLFMQWAVDT LQHEHPPAPA AAYAGGGTFP  60
SLEELRRSAL QHGTAQDGHR HLAADSWSSG DSAGGGHENT SAAVVENDVW SSNSAKCATA  120
CSVGSSNHLP MSWNFTSALA QPSNEAPAAA APPSGAHDGP GVTVPEQAHV SAPTSRRASA  180
AKGAARAAGH TPYAQDHIMA ERKRREKINR RFIELSTVIP GLKKMDKATI LSDAVKYVKE  240
QQEKLKALED RSLRSVAVES VVLVKKKSRT AAAAPEDDCP SPSAGAVAVS TTTTTTTGGS  300
ALPEIEARIT ESNVMVRIHC EDSKGVLVRL LAEVEGLHLS ITHANAIQFP ACTVIITVMA  360
KVDDGFSVTA EDIIAKVEAA LPAPTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205ERKRRE
2201206RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36423.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646670.0AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175438.11e-180transcription factor NAI1-like
TrEMBLM0VQH30.0M0VQH3_HORVV; Uncharacterized protein
STRINGMLOC_36423.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-38bHLH family protein