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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_36423.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 38425.1 Da PI: 6.392 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2e-14 | 176 | 222 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN +f eL +++P + kK++Ka+iL Av+Y+k+ q MLOC_36423.2 176 DHIMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVKYVKEQQ 222 699************************.....9****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.618 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-17 | 176 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-12 | 176 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-16 | 176 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-15 | 177 | 226 | No hit | No description |
SMART | SM00353 | 3.6E-15 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MYQLEAMDDS SLFMQWAVDT LQHEHPPAPA AAYAGGGTFP SLEELRRSAL QHGTAQDGHR 60 HLAADSWSSG DSAGGGHENT SAAVVENDVW SSNSAKCATA CSVGSSNHLP MSWNFTSALA 120 QPSNEAPAAA APPSGAHDGP GVTVPEQAHV SAPTSRRASA AKGAARAAGH TPYAQDHIMA 180 ERKRREKINR RFIELSTVIP GLKKMDKATI LSDAVKYVKE QQEKLKALED RSLRSVAVES 240 VVLVKKKSRT AAAAPEDDCP SPSAGAVAVS TTTTTTTGGS ALPEIEARIT ESNVMVRIHC 300 EDSKGVLVRL LAEVEGLHLS ITHANAIQFP ACTVIITVMA KVDDGFSVTA EDIIAKVEAA 360 LPAPTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 185 | ERKRRE |
2 | 181 | 186 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_36423.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364667 | 0.0 | AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175438.1 | 1e-180 | transcription factor NAI1-like | ||||
TrEMBL | M0VQH1 | 0.0 | M0VQH1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_36423.5 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-38 | bHLH family protein |