PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_36345.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bHLH

Protein Properties

Length: 188aa MW: 21616.6 Da PI: 9.0246

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_36345.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.7	1.8e-17	23	70	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRd+iN+++ L+ellP++ ++ +K+++L +A++Y+ksLq MLOC_36345.3 23 HNFSERRRRDKINEKLKALQELLPNC---TKVHTDKVSMLDEAIDYLKSLQ 70 99**********************...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.03E-20	16	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.479	18	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.12E-17	23	74	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-19	23	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-14	23	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-17	24	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK VHTDKVSMLD 60 EAIDYLKSLQ LQLQMLVMGK GMAPVVPPEL QQYMHYITTD PAAQLMQIPP SEPPRPFQIT 120 HANPPQQESD FLSQMQNHLH PSDQPQINFL RPPKLQLYTP EQRGGIGSSS GHNGGWIPER 180 SSSYNFME

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	ERRRRD
2	27	32	RRRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_36345.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250458	0.0	AK250458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83b20, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171332.1	1e-135	transcription factor PIF1-like isoform X1
Swissprot	Q0JNI9	2e-27	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	M0VQ53	1e-137	M0VQ53_HORVV; Uncharacterized protein
STRING	MLOC_36345.3	1e-138	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9562	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	5e-29	phytochrome interacting factor 3

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]