PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36343.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 885aa    MW: 99025.8 Da    PI: 6.5774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36343.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-074982338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      W+++E   +++a +++G++ Wk+I++ +g  +++ 
     MLOC_36343.1 49 VWSKDELMHFYEAYRRHGKN-WKKISAVVG-SKSAD 82
                     6*****************99.*********.88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.8754596IPR017884SANT domain
SuperFamilySSF466891.2E-94793IPR009057Homeodomain-like
PfamPF002493.5E-64984IPR001005SANT/Myb domain
CDDcd001674.60E-45081No hitNo description
PfamPF065841.5E-31508608IPR033471DIRP domain
SMARTSM011352.1E-37508609IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MGPAKGSRTI HKITIKRHED QQHHEDPTSS SNVKLKISHK RKRSDLDPVW SKDELMHFYE  60
AYRRHGKNWK KISAVVGSKS ADTVEALYYV HRTFLSLPER EGTAGGFIAL VAGHDNALES  120
PSHRETDQMV RSSGKGRRRG EAAWQKENAA PHPHNAFTNQ EMRISGFTSS FKKRYHGELV  180
RYIRRNPVRK RTPRVPVLLP LDINATDNST PQIKNTVSAT NKANEEINND GSSPDGSSGI  240
TEAKVVQGQT FLEIKGTEDT EISQSQQHLN LKKRRIQQSM DEGQTSNVEP GTKMVAEKEG  300
HNLSDYDRLS QLFSPEEMMV LDVLESLVSV PNETSQAKIN IPSGTCGKRI SASSNTEEEG  360
LSPVDQSEQT KQDSDSSASE ERKKRRKKLP DEEVLAEEQI SSGNTSVIPQ ACQLYTTEWP  420
SLNSDFEKEA AIDIPESTSN ISAEVSPDAP MEIDPQINMS RKSKRKFKGH CKKNYLFCNE  480
GADNLQAKKL LHCLSSESLR RWCTYEWFYS AVDYPWFMDN EFVNYLNFAK LSHLSRLTRS  540
EWSTIRSSLG KPRRFSNHFL EAEKEKLEDY RQNVRKYYAE LSDGLRDSLP TDLAQPFSVG  600
QHVIVRHPTT RELADGKVVI MERDCYKVQF DSPYLGVDII KDTDCMPVNW LDNLPDDLKK  660
RSSLSNNAHR KPDFEHIPEL TSKESWGNIM NDISVPEPSS SRQAAYSVGS EMLPSNTICR  720
STLPPLHPLQ SVDNSLQSKG RSNHSSGQSD ELDSCVTAFI QKSLSQAKQV VDEVMQASYG  780
NGSESGDEAT PCISLDSEAA LDDAQLPSTL IENCVATVIA IKDLSEYRHP PAKIAGVLER  840
AFSMLRPSCP QNLSIYADIE SCIGMIKSQI LALVPTTAGN AALAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380388ERKKRRKKL
2381387RKKRRKK
3381388RKKRRKKL
4382386KKRRK
5382387KKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753660.0AK375366.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171718.10.0protein ALWAYS EARLY 3-like
RefseqXP_020171719.10.0protein ALWAYS EARLY 3-like
TrEMBLM0VQ430.0M0VQ43_HORVV; Uncharacterized protein
STRINGMLOC_36343.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.24e-66DNA binding