PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_34429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 79aa MW: 8786.16 Da PI: 5.0522 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.7 | 9e-08 | 1 | 38 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ +L+el+P+ +K++ +++LekA+ Y+k Lq MLOC_34429.1 1 REKISERLRTLQELVPNG-----TKVDMVTMLEKAIGYVKFLQ 38 89**************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00010 | 4.3E-5 | 1 | 38 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-11 | 1 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-9 | 1 | 42 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-12 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0028 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.065 | 1 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
REKISERLRT LQELVPNGTK VDMVTMLEKA IGYVKFLQLQ VKVLATDEFW PAQGGKAPEI 60 SDVKEALDAI LSSQTGQLN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_34429.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109662 | 6e-72 | AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756070.2 | 6e-44 | transcription factor APG | ||||
Swissprot | Q9FJ00 | 2e-39 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A287UKD3 | 2e-50 | A0A287UKD3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_34429.1 | 7e-51 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 8e-42 | RHD SIX-LIKE 1 |
Publications ? help Back to Top | |||
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