PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_33189.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 598aa MW: 65661.3 Da PI: 7.1741 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.7e-12 | 444 | 490 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq MLOC_33189.2 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 490 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.6E-49 | 54 | 243 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.101 | 440 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-14 | 443 | 494 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 444 | 502 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 444 | 490 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-18 | 444 | 508 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-16 | 446 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MKTEIEEEVT KGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASV LVGLQNKLQD 60 LVEADGQSLC WNYAIFWQLS RTRSGELVLG WGDGSCREPH DNEMNSTTRG DIHDASSLSQ 120 QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPRHVG GPGQVFATGA 180 PLWIPNNPHK VSPSNYCYRG FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR 240 SVFLGESRKK AASGKHDENG SAQISPGLAK IFGKDLNLSR PLVNTGAVPL KMSERPWDMQ 300 KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKSETSQRS NGAAHSPGVS 360 PFQLQNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ AALLGGENGS VDGLCKDQVP 420 PAMEGQQPRK RGRKPANGRV EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG 480 DAITHITDLQ KKLKEMESER DMFLESGMPD RMVRTPRPEV DIQVVQDEVL VRVMSPMDNY 540 PVKNVFQAFE EAEVKVGESK ITSNNGTVVH SFVIKSPGSE QQTREKLIAA MSRAMSSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_33189.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252240 | 0.0 | AK252240.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144n21, mRNA sequence. | |||
GenBank | AK354365 | 0.0 | AK354365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006N15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150590.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | F2CRW3 | 0.0 | F2CRW3_HORVV; Predicted protein | ||||
STRING | MLOC_33189.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-133 | bHLH family protein |