PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_33189.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 598aa    MW: 65661.3 Da    PI: 7.1741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_33189.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12444490455
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  MLOC_33189.1 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 490
                   799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-4954243IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.101440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-14443494No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17444502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9444490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-18444508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MKTEIEEEVT KGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASV LVGLQNKLQD  60
LVEADGQSLC WNYAIFWQLS RTRSGELVLG WGDGSCREPH DNEMNSTTRG DIHDASSLSQ  120
QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPRHVG GPGQVFATGA  180
PLWIPNNPHK VSPSNYCYRG FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR  240
SVFLGESRKK AASGKHDENG SAQISPGLAK IFGKDLNLSR PLVNTGAVPL KMSERPWDMQ  300
KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKSETSQRS NGAAHSPGVS  360
PFQLQNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ AALLGGENGS VDGLCKDQVP  420
PAMEGQQPRK RGRKPANGRV EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG  480
DAITHITDLQ KKLKEMESER DMFLESGMPD RMVRTPRPEV DIQVVQDEVL VRVMSPMDNY  540
PVKNVFQAFE EAEVKVGESK ITSNNGTVVH SFVIKSPGSE QQTREKLIAA MSRAMSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-25438500264Transcription factor MYC2
5gnj_B3e-25438500264Transcription factor MYC2
5gnj_E3e-25438500264Transcription factor MYC2
5gnj_F3e-25438500264Transcription factor MYC2
5gnj_G3e-25438500264Transcription factor MYC2
5gnj_I3e-25438500264Transcription factor MYC2
5gnj_M3e-25438500264Transcription factor MYC2
5gnj_N3e-25438500264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_33189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2522400.0AK252240.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144n21, mRNA sequence.
GenBankAK3543650.0AK354365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006N15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150590.10.0transcription factor bHLH13-like
TrEMBLF2CRW30.0F2CRW3_HORVV; Predicted protein
STRINGMLOC_33189.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-133bHLH family protein