![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_33189.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
Family |
bHLH |
Protein Properties |
Length: 598aa MW: 65661.3 Da PI: 7.1741 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_33189.1 | genome | IBSC | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Hvu&pid=MLOC_33189.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 36.7 | 7.7e-12 | 444 | 490 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq
MLOC_33189.1 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 490
799***********************66......*****************99 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 598 aa
Download sequence Send
to blast |
MKTEIEEEVT KGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASV LVGLQNKLQD 60 LVEADGQSLC WNYAIFWQLS RTRSGELVLG WGDGSCREPH DNEMNSTTRG DIHDASSLSQ 120 QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPRHVG GPGQVFATGA 180 PLWIPNNPHK VSPSNYCYRG FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR 240 SVFLGESRKK AASGKHDENG SAQISPGLAK IFGKDLNLSR PLVNTGAVPL KMSERPWDMQ 300 KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKSETSQRS NGAAHSPGVS 360 PFQLQNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ AALLGGENGS VDGLCKDQVP 420 PAMEGQQPRK RGRKPANGRV EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG 480 DAITHITDLQ KKLKEMESER DMFLESGMPD RMVRTPRPEV DIQVVQDEVL VRVMSPMDNY 540 PVKNVFQAFE EAEVKVGESK ITSNNGTVVH SFVIKSPGSE QQTREKLIAA MSRAMSSM
|
3D Structure ? help Back to Top |
![Structure](draw_protein_structure.php?sp=Hvu&pid=MLOC_33189.1) |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK252240 | 0.0 | AK252240.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144n21, mRNA sequence. |
GenBank | AK354365 | 0.0 | AK354365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006N15. |