PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_31327.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 318aa    MW: 34128.6 Da    PI: 5.5167
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_31327.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.55.9e-73953092217
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfsh 95 
                   v +L++cAea++  ++ +a+ +Larl e+asp+g +p++R+aayf+eALa r a++++++++  pp+e ++     ++ + al++++ v+Pi++f h
  MLOC_31327.1  95 VGALTACAEALAGCQHDAANYYLARLGETASPSGpTPLHRVAAYFAEALALRAANMWPHVFDVTPPRELTDGAfhDDDDALALRVLNSVTPIPRFLH 191
                   678******************************************************************988887888999999************* PP

          GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   +t N+ + +a++g++rvHiiDfdi+qGlQWp+Llq+La+R+ e+p+++RiTgvgs    s++el+ tg rLa++A+ lg+ fef++ v++rled++l
  MLOC_31327.1 192 FTLNERLIRAFDGHDRVHIIDFDIKQGLQWPSLLQSLAARRpEPPAHVRITGVGS----SRQELQDTGARLAHVAAGLGLAFEFHA-VVDRLEDVRL 283
                   **************************************66548888*********....9**************************.7********* PP

          GRAS 192 eeLrvkpgEalaVnlvlqlhrlldes 217
                   ++L+vk+gE +aVn++l+ hrll+++
  MLOC_31327.1 284 WMLHVKRGERVAVNCILAAHRLLRDE 309
                   **********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.68768318IPR005202Transcription factor GRAS
PfamPF035142.0E-7095309IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMQVAAGEGG EEEVAEEERK VFLVPSAAAF PHGMVAAAGP SSLAAAKQEE YSKSPSHSSS  60
SSGTDGGSSA MLPLDPAGVR SFVVPEAERE ALELVGALTA CAEALAGCQH DAANYYLARL  120
GETASPSGPT PLHRVAAYFA EALALRAANM WPHVFDVTPP RELTDGAFHD DDDALALRVL  180
NSVTPIPRFL HFTLNERLIR AFDGHDRVHI IDFDIKQGLQ WPSLLQSLAA RRPEPPAHVR  240
ITGVGSSRQE LQDTGARLAH VAAGLGLAFE FHAVVDRLED VRLWMLHVKR GERVAVNCIL  300
AAHRLLRDET GGALSDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-3910131126229Protein SCARECROW
5b3h_A7e-3910131125228Protein SCARECROW
5b3h_D7e-3910131125228Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_31327.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158067.10.0scarecrow-like protein 28
SwissprotQ9LWU91e-123DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A287VHW30.0A0A287VHW3_HORVV; Uncharacterized protein
STRINGMLOC_31327.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-81GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]