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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_30102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 74aa MW: 8436.79 Da PI: 10.2884 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.4e-12 | 8 | 48 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR +i +++ +L+el+P+ k + +++L +Av+YIk+Lq MLOC_30102.1 8 VRRTKISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 48 6******************6....4679****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.176 | 1 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-7 | 3 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-14 | 7 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-8 | 8 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.15E-8 | 9 | 52 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-16 | 10 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
RGVRCTQVRR TKISERIRKL QELVPNMEKQ TNTSDMLDLA VDYIKELQMQ VKVMNDGRAG 60 CTCSAGRPQK HFAG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_30102.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371504 | 1e-111 | AK371504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2135O23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238294.1 | 5e-34 | transcription factor bHLH130 isoform X1 | ||||
Swissprot | Q66GR3 | 2e-25 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A287RSC2 | 4e-42 | A0A287RSC2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_30102.2 | 7e-43 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-27 | bHLH family protein |
Publications ? help Back to Top | |||
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