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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_28796.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 284aa MW: 32696 Da PI: 8.4046 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 8.1e-14 | 191 | 273 | 2 | 86 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 +k+++ sd ++ + lp +f +kk++++ l+ +d +++sWevk ++ k++++ +++GW +F+++ngLk gD ++Fk+++ MLOC_28796.4 191 LKKEIGSDGVLKA-FHLPDHFG----YKKNCKILLRPMD-RNESWEVKGSVIKRPNTvytmNRFRGGWAKFCEENGLKKGDLCTFKVVN 273 5666666666666.78888886....5566754555444.779*******988888864334456*********************764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.529 | 1 | 82 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-11 | 205 | 273 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-11 | 208 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.85E-10 | 208 | 270 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-13 | 209 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.221 | 217 | 284 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MLIPHEFLRR GYISEEDLNK RPLMATFLSH WHIGLERDGP DVFFAGSVWA DFLDMLDLSE 60 TDVLLIKYQG CMNFSIEKFG HGDDEHIEEE PGCSEESKQS PGAQSQEEEH VSTRKRKQSN 120 CKAPGAQGQE GKHVSTRTRK RKESNCKTPR AQGQEGERSK GERMLERHTT SRHVNMSCFF 180 EIGKTGSQDW LKKEIGSDGV LKAFHLPDHF GYKKNCKILL RPMDRNESWE VKGSVIKRPN 240 TVYTMNRFRG GWAKFCEENG LKKGDLCTFK VVNGKLWEVN IERR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 117 | TRKRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_28796.4 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181881.1 | 2e-94 | putative B3 domain-containing protein Os04g0346900 isoform X4 | ||||
TrEMBL | M0VHL2 | 0.0 | M0VHL2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_28796.5 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25475.3 | 2e-07 | B3 family protein |