PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_28796.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 284aa    MW: 32696 Da    PI: 8.4046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_28796.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.1e-14191273286
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 
                   +k+++ sd   ++ + lp +f     +kk++++ l+ +d +++sWevk ++ k++++      +++GW +F+++ngLk gD ++Fk+++
  MLOC_28796.2 191 LKKEIGSDGVLKA-FHLPDHFG----YKKNCKILLRPMD-RNESWEVKGSVIKRPNTvytmNRFRGGWAKFCEENGLKKGDLCTFKVVN 273
                   5666666666666.78888886....5566754555444.779*******988888864334456*********************764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.529182IPR003340B3 DNA binding domain
PfamPF023626.2E-11205273IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-11208281IPR015300DNA-binding pseudobarrel domain
CDDcd100175.85E-10208270No hitNo description
Gene3DG3DSA:2.40.330.105.2E-13209282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.221217284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLIPHEFLRR GYISEEDLNK RPLMATFLSH WHIGLERDGP DVFFAGSVWA DFLDMLDLSE  60
TDVLLIKYQG CMNFSIEKFG HGDDEHIEEE PGCSEESKQS PGAQSQEEEH VSTRKRKQSN  120
CKAPGAQGQE GKHVSTRTRK RKESNCKTPR AQGQEGERSK GERMLERHTT SRHVNMSCFF  180
EIGKTGSQDW LKKEIGSDGV LKAFHLPDHF GYKKNCKILL RPMDRNESWE VKGSVIKRPN  240
TVYTMNRFRG GWAKFCEENG LKKGDLCTFK VVNGKLWEVN IERR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117TRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_28796.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181881.12e-94putative B3 domain-containing protein Os04g0346900 isoform X4
TrEMBLM0VHL20.0M0VHL2_HORVV; Uncharacterized protein
STRINGMLOC_28796.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.32e-07B3 family protein