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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MLOC_28138.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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| Family |
C2H2 |
| Protein Properties |
Length: 82aa MW: 9699.29 Da PI: 10.0414 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_28138.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.9 | 7.7e-05 | 24 | 46 | 1 | 21 |
EEET..TTTEEESSHHHHHHHHH CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21
y+C+ C++sF +k +L H r
MLOC_28138.1 24 YTCNieGCSMSFDTKNELSLHER 46
99*******************87 PP
|
| 2 | zf-C2H2 | 14.1 | 0.00014 | 53 | 71 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
Cgk F ++ +L rH +H
MLOC_28138.1 53 GCGKKFFTHKHLLRHREVH 71
6**************9988 PP
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6a57_A | 1e-14 | 21 | 72 | 20 | 71 | Lysine-specific demethylase REF6 |
| 6a58_A | 1e-14 | 21 | 72 | 20 | 71 | Lysine-specific demethylase REF6 |
| 6a59_A | 1e-14 | 21 | 72 | 20 | 71 | Lysine-specific demethylase REF6 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}. |
