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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_25537.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 237aa MW: 25519.2 Da PI: 5.4498 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.3 | 3.6e-10 | 179 | 236 | 1 | 53 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyr 53 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr MLOC_25537.2 179 FCKTLTASDTSTHGGFSVPRRAAEDCfphldyN-QQRPSQELVAKDLHGTEWKFRHIYR 236 99****************************963.3445679***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 173 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-28 | 174 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-10 | 177 | 237 | No hit | No description |
Pfam | PF02362 | 2.8E-8 | 179 | 236 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAGIDLNTVE EDEEESSAEP LLAGTGCGGD CSSQSHSHSH SQTQSGYNGQ ASSPVATPPS 60 RPSAVCLELW HACAGPVAPM PRKGSVVVYL PQGHLDHLGD APAHAAASPA AAVPPHVFCR 120 VVDVTLHADA TTDEVYAQLS LLPENEELVR RMREATDDVS GGEDGETVKQ RFARMPHMFC 180 KTLTASDTST HGGFSVPRRA AEDCFPHLDY NQQRPSQELV AKDLHGTEWK FRHIYRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 6e-50 | 64 | 237 | 18 | 182 | Auxin response factor 1 |
4ldw_A | 6e-50 | 64 | 237 | 18 | 182 | Auxin response factor 1 |
4ldw_B | 6e-50 | 64 | 237 | 18 | 182 | Auxin response factor 1 |
4ldx_A | 6e-50 | 64 | 237 | 18 | 182 | Auxin response factor 1 |
4ldx_B | 6e-50 | 64 | 237 | 18 | 182 | Auxin response factor 1 |
4ldy_A | 6e-50 | 64 | 237 | 18 | 182 | Auxin response factor 1 |
4ldy_B | 6e-50 | 64 | 237 | 18 | 182 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_25537.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362090 | 0.0 | AK362090.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002F15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158279.1 | 1e-107 | auxin response factor 15-like | ||||
Swissprot | Q0JKI9 | 1e-90 | ARFB_ORYSJ; Auxin response factor 2 | ||||
TrEMBL | A0A287GLT9 | 1e-170 | A0A287GLT9_HORVV; Auxin response factor | ||||
STRING | MLOC_25537.2 | 1e-176 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2537 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-73 | ARF family protein |
Publications ? help Back to Top | |||
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