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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 123aa MW: 13384.8 Da PI: 5.3578 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.5e-20 | 9 | 59 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + r++lg+f+taeeAa+a+++a+ + +g MLOC_238.1 9 KYRGVRKRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAQKG 59 8********.**********8333..4**********************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 9 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-33 | 9 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 9 | 59 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 9 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-23 | 9 | 67 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.37E-29 | 9 | 67 | No hit | No description |
PRINTS | PR00367 | 3.5E-12 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-12 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MEDDKKEGKY RGVRKRPWGK FAAEIRDPER GGSRVWLGTF DTAEEAARAY DRAAFAQKGA 60 TAVLNFPGEA GRMSGGGGSS SSSGAATAAA SRRVPDTEKV ELEYLDDRVL DELLAEEYYS 120 SKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-31 | 7 | 109 | 12 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_238.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727512 | 4e-80 | KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201406.1 | 1e-59 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 2e-35 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | M0VDL6 | 2e-81 | M0VDL6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_238.1 | 3e-82 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-23 | ERF family protein |
Publications ? help Back to Top | |||
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