 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MLOC_23537.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
TCP |
| Protein Properties |
Length: 197aa MW: 20876.5 Da PI: 7.296 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_23537.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 102.2 | 9.1e-32 | 45 | 135 | 10 | 89 |
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.............k 89
k h+kv+gR+ RvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++ +a ++ ++++ssss + +
MLOC_23537.1 45 KGHSKVNGRGQRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTAPAAFVsssTPSTSSSSF-----SyphtllgkrpreeN 135
88******************************************************99999666222222222222.....122233333333330 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MTSHDIAAAP SPFHVYQQHL PMTVAPSPDV GLAPAPSKEA GGSVKGHSKV NGRGQRVRMP 60
IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSILAATGT GTAPAAFVSS STPSTSSSSF 120
SYPHTLLGKR PREENDAVGA AAAASAFWAA LPWQDDWGFS PLEAQATYMP MAQVHQHHLD 180
LVAAVSGAAR RAEEEIR
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK061568 | 5e-84 | AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence. |
| GenBank | AP004067 | 5e-84 | AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09. |
| GenBank | AP014958 | 5e-84 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
