PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

CO-like

Protein Properties

Length: 303aa MW: 32212.7 Da PI: 6.1302

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_22698.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.2	6.8e-08	19	56	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 r C+ + + ++lfC+ + +lC+ C H + H MLOC_22698.1 19 RACDSCATEAARLFCRADAAFLCAGCDARAHGSgsrHA 56 67**************************9994366675 PP
2	zf-B_box	25.3	3.3e-08	58	103	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC++C +H H++vp+ MLOC_22698.1 58 VWLCEVCEHAPAAVTCKADAAVLCASCDADIHAAnplarrHERVPV 103 679*****************************66888889999986 PP
3	CCT	70.2	5.2e-24	236	278	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+ MLOC_22698.1 236 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRVKGRFAKR 278 9****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.4E-6	16	60	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.651	16	60	IPR000315	B-box-type zinc finger
CDD	cd00021	5.13E-7	19	60	No hit	No description
Pfam	PF00643	3.3E-6	19	55	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.509	56	103	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.6E-6	58	103	IPR000315	B-box-type zinc finger
CDD	cd00021	6.98E-8	59	103	No hit	No description
SMART	SM00336	1.4E-8	61	103	IPR000315	B-box-type zinc finger
Pfam	PF06203	5.4E-18	236	278	IPR010402	CCT domain
PROSITE profile	PS51017	16.936	236	278	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEGEEKPVVG GAYWGVGARA CDSCATEAAR LFCRADAAFL CAGCDARAHG SGSRHARVWL 60 CEVCEHAPAA VTCKADAAVL CASCDADIHA ANPLARRHER VPVAPFFGAA ADAHKPFPSS 120 GAQAGAAASA EDDGSNDAEA ASWLLPEPDH KDGANGATAD VFFADSDHYL DLDFARSMDD 180 IKAISVQLNG QPEIDLNGGN KGFYSDHSMN HSLSSSEAAV VPDAAAAPVV SRGREREARL 240 MRYREKRKSR RFEKTIRYAS RKAYAETRPR VKGRFAKRTG TADADALEEH EEMYSSAAAA 300 PAP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_22698.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF490475	0.0	AF490475.1 Hordeum vulgare subsp. vulgare cultivar Morex CONSTANS-like protein (CO4) mRNA, complete cds.
GenBank	AK366729	0.0	AK366729.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046F01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189579.1	0.0	zinc finger protein CONSTANS-LIKE 4-like
Swissprot	Q9FHH8	2e-75	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	Q8L4X3	0.0	Q8L4X3_HORVV; CONSTANS-like protein
STRING	MLOC_22698.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	5e-59	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]