PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_21759.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 183aa MW: 19104.6 Da PI: 7.4189 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.6e-11 | 130 | 162 | 1 | 36 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapsk 36 +r++h ++Er+RR+++N+ ++ Lr+l+P++ +++ MLOC_21759.2 130 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YAQ 162 79**************************97...444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.27E-9 | 122 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-9 | 128 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-9 | 128 | 170 | No hit | No description |
PROSITE profile | PS50888 | 10.829 | 129 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-8 | 130 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MALEAAVFSR AAAARLFGRC AMAGAGGAWN GLFGGGEGLA GLDGGDWDAD AVAAACSSML 60 LPHAAFQELD ISVPGAATTP PQEGTGVPGA ELNAAGVGED NATPMTAAAT GRRKRRRTRT 120 AKNSEEVESQ RMTHIAVERN RRKQMNEYLA ALRSLMPPSY AQRVTLTAAI GLLDPFAVVT 180 YWL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 116 | RKRRR |
2 | 112 | 117 | RKRRRT |
3 | 130 | 141 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_21759.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005399 | 9e-67 | AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02. | |||
GenBank | AP005574 | 9e-67 | AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08. | |||
GenBank | AP014965 | 9e-67 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 9e-67 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148028.1 | 1e-68 | transcription factor bHLH94-like | ||||
TrEMBL | A0A287RP14 | 1e-127 | A0A287RP14_HORVV; Uncharacterized protein | ||||
STRING | MLOC_21759.1 | 1e-82 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 5e-20 | bHLH family protein |