PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bHLH

Protein Properties

Length: 331aa MW: 35102.7 Da PI: 9.2298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_21759.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	130	181	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ MLOC_21759.1 130 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YAQRGDQASIVGGAINFVKELE 181 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.56E-14	128	185	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-14	128	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.075	129	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-17	129	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-11	130	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-11	135	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MALEAAVFSR AAAARLFGRC AMAGAGGAWN GLFGGGEGLA GLDGGDWDAD AVAAACSSML 60 LPHAAFQELD ISVPGAATTP PQEGTGVPGA ELNAAGVGED NATPMTAAAT GRRKRRRTRT 120 AKNSEEVESQ RMTHIAVERN RRKQMNEYLA ALRSLMPPSY AQRGDQASIV GGAINFVKEL 180 EQLLQTLETH RQARERAAAV DGGEAQPPPF ANFFTFPQYS MSATSAPAPP PPANNDEGAD 240 GGAEAEASGS KPSAVADVEV TMVESHANLR MLSRRRPRQL LRLLVGLQGH RLTVLHLNMS 300 SAGHMVLYSL SLKVRTPTRC PSRTSKQFRL F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	116	RKRRR
2	112	117	RKRRRT
3	130	141	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_21759.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005399	8e-84	AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBank	AP005574	8e-84	AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBank	AP014965	8e-84	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	8e-84	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020148028.1	1e-164	transcription factor bHLH94-like
Swissprot	Q9C7T4	4e-63	BH096_ARATH; Transcription factor bHLH96
TrEMBL	M0VBF6	0.0	M0VBF6_HORVV; Uncharacterized protein
STRING	MLOC_21759.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	5e-42	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]