PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19814.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family DBB
Protein Properties Length: 349aa    MW: 37552.9 Da    PI: 4.9835
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19814.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.6e-05444539
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                   C+ +e  e++  C  ++  lC+ C    H        H +
  MLOC_19814.1  4 LCSACEAAEARVVCCADEAALCARCDRDVHDAnrlagkHHR 44
                  7******99******************99944667777554 PP
2zf-B_box28.72.7e-095999337
      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                  +++C+ ++e ++ +fC +++ llC++C ++ H        H
  MLOC_19814.1 59 APNCDICQEGHAYFFCVEDRALLCRSCDVAVHTAnafvsaH 99
                  689******88*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.8E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.452147IPR000315B-box-type zinc finger
CDDcd000218.80E-7347No hitNo description
SMARTSM003362.8E-1357104IPR000315B-box-type zinc finger
PROSITE profilePS501199.41457104IPR000315B-box-type zinc finger
PfamPF006432.0E-75991IPR000315B-box-type zinc finger
CDDcd000213.12E-962104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKVLCSACEA AEARVVCCAD EAALCARCDR DVHDANRLAG KHHRLPLLSA VSNPPAVSAP  60
NCDICQEGHA YFFCVEDRAL LCRSCDVAVH TANAFVSAHR RFLLTGVQVG LEPDEQEEPE  120
PEPEPEPQPP NNTSSAPLQP PMCHRKRSPT PLYSDGDIEW AAGQDVGITG NLPDWSVIDE  180
QFASGTPALR PAEPEVIKAP PKKSPRVAVT AASAALFGGS MPDWPLDEFF GFTEFNSGFG  240
FAENGTSKAD SGKLGSPNRR SLSSSSSGNA IQNAQDFFGQ VPEVHWSRSA MPELPSPPTA  300
SGLHWQGDPH YGSNADTASV FVPDICSPEN PFRCFTAGAD QQLKRRRRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19814.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559200.0AK355920.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192017.10.0B-box zinc finger protein 22-like
TrEMBLF2CWB70.0F2CWB7_HORVV; Predicted protein
STRINGMLOC_19814.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-48light-regulated zinc finger protein 1