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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_19134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 220aa MW: 23730.2 Da PI: 11.3742 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.8 | 5.7e-25 | 45 | 151 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---...--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke.esktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kv tpsdv+k++rlv+pk+fae+h + + l++ed +g r W ++++y+ +s++yv+tkGW+ Fv++ +L +gD+v F MLOC_19134.1 45 FDKVVTPSDVGKLNRLVVPKHFAERHilprllggaarA---AcPGAVLRFEDGRGggRAWAFRFSYWSSSQSYVMTKGWSAFVRDRRLAAGDTVSFC 138 89*****************************9875431...2234579999977788***************************************9 PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 r++++l++ +r+ MLOC_19134.1 139 ---RTGARLFIDCRRR 151 ...5677788888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-31 | 40 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.05E-24 | 42 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.67E-24 | 43 | 142 | No hit | No description |
Pfam | PF02362 | 9.1E-22 | 45 | 151 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.887 | 45 | 152 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-13 | 45 | 152 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MALTAGGGES RGAEQDGGGG GVELSRSSGN GGNGEERRMR REHMFDKVVT PSDVGKLNRL 60 VVPKHFAERH ILPRLLGGAA RAACPGAVLR FEDGRGGGRA WAFRFSYWSS SQSYVMTKGW 120 SAFVRDRRLA AGDTVSFCRT GARLFIDCRR RGTGIGASAP PTRLLAPAVM PQVVTLMPQR 180 STSSGETAPH VRCFRLFGVD LELIGAEPLS LDLQLALMRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-37 | 41 | 151 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-37 | 41 | 151 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_19134.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179500.1 | 1e-124 | B3 domain-containing protein Os06g0107800-like | ||||
Swissprot | Q5VS55 | 6e-53 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | M0V692 | 1e-156 | M0V692_HORVV; Uncharacterized protein | ||||
STRING | MLOC_19134.1 | 1e-157 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 4e-33 | B3 family protein |