PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18466.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 265aa    MW: 28563.5 Da    PI: 7.4756
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18466.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY190.29.9e-59242155169
         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee.....................lleelkve 78 
                      eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl++     aa+ +l   +sl  +                     +l +++ +
  MLOC_18466.1  24 AEQEQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRNLLLPAAAN-QLpfTQSLLSPtspasphglldemssfqapssIL-TDQAS 118
                   6789******************************************9877433332.2311222222256668999988888887766422.22233 PP

         YABBY  79 eenlksnvekeesastsvssekl......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                    +  + + +++++a ++ +++++      ++ e ++ + +    +  ekrqrvPsaynrfik+eiqrika nP+i hr+afsaaaknWahfP+ihfg
  MLOC_18466.1 119 PNVSSITSSSNSCAINTPAMSMMpppekpTQREPQQRKSAASGTKHSEKRQRVPSAYNRFIKDEIQRIKAINPEIPHRQAFSAAAKNWAHFPRIHFG 215
                   333333334444555555555568876543333333333455799***************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-6525216IPR006780YABBY protein
SuperFamilySSF470951.31E-6158209IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.8E-4162210IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMSPAESETS FFPDHLAEQQ PPFAEQEQLC YVHCNFCDTI LAVGVPCSSL FKTVAVRCGH  60
CANLLSVNLR NLLLPAAANQ LPFTQSLLSP TSPASPHGLL DEMSSFQAPS SILTDQASPN  120
VSSITSSSNS CAINTPAMSM MPPPEKPTQR EPQQRKSAAS GTKHSEKRQR VPSAYNRFIK  180
DEIQRIKAIN PEIPHRQAFS AAAKNWAHFP RIHFGMMPDQ GLMRKPSIQS QLDGAGDCML  240
FNDSVYAAAA AAAATAASSM GATPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18466.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763500.0AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167170.11e-165protein YABBY 5-like
SwissprotQ01JG21e-120YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-120YAB5_ORYSJ; Protein YABBY 5
TrEMBLM0V5320.0M0V532_HORVV; Uncharacterized protein
STRINGMLOC_18466.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.14e-46YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]