 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
MLOC_18466.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
Family |
YABBY |
Protein Properties |
Length: 265aa MW: 28563.5 Da PI: 7.4756 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_18466.1 | genome | IBSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 190.2 | 9.9e-59 | 24 | 215 | 5 | 169 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee.....................lleelkve 78
eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl++ aa+ +l +sl + +l +++ +
MLOC_18466.1 24 AEQEQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRNLLLPAAAN-QLpfTQSLLSPtspasphglldemssfqapssIL-TDQAS 118
6789******************************************9877433332.2311222222256668999988888887766422.22233 PP
YABBY 79 eenlksnvekeesastsvssekl......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
+ + + +++++a ++ +++++ ++ e ++ + + + ekrqrvPsaynrfik+eiqrika nP+i hr+afsaaaknWahfP+ihfg
MLOC_18466.1 119 PNVSSITSSSNSCAINTPAMSMMpppekpTQREPQQRKSAASGTKHSEKRQRVPSAYNRFIKDEIQRIKAINPEIPHRQAFSAAAKNWAHFPRIHFG 215
333333334444555555555568876543333333333455799***************************************************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MMSPAESETS FFPDHLAEQQ PPFAEQEQLC YVHCNFCDTI LAVGVPCSSL FKTVAVRCGH 60 CANLLSVNLR NLLLPAAANQ LPFTQSLLSP TSPASPHGLL DEMSSFQAPS SILTDQASPN 120 VSSITSSSNS CAINTPAMSM MPPPEKPTQR EPQQRKSAAS GTKHSEKRQR VPSAYNRFIK 180 DEIQRIKAIN PEIPHRQAFS AAAKNWAHFP RIHFGMMPDQ GLMRKPSIQS QLDGAGDCML 240 FNDSVYAAAA AAAATAASSM GATPF
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. |
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK376350 | 0.0 | AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03. |