PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18435.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 557aa    MW: 63340.9 Da    PI: 9.7566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18435.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12e-10300385797
                   .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ++ ++ +  l +p + ae+ +++  +++ + led++g+s  v+l  +  +g+  + +GW +Fv+++ +k  +++vF+++g s+f   v+vf
  MLOC_18435.3 300 QNKHFMEF-LLIPPDVAEAPKMVGLTNRHVCLEDSEGKSSIVRL--SEVDGSLAFCQGWDNFVSDHSIKWAEMLVFEYTGCSKF--SVRVF 385
                   45555554.89999999888666667788***************..9999999999**********************986777..88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.489293388IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-14294388IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-14294386IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-9295385No hitNo description
PfamPF023623.6E-8300385IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSRDALARQN RPRSRDDEEE GETCKMQSKE EEEVETCKMQ SKEEEEEVEV EMFDKRFQIR  60
KASTGSLGKG KRIEEPIELS DSDDHDEDYK MEKAAKYKEK KRIHNHSGDH KKKKKKHVSS  120
HGREKTRSGD SDKDKRRDKL LSLNKNKDHL PLKEKSWERP SSQGGEKKMH RCDHHNDNRS  180
SKMWRSVYDK YKGMQKKEMN KDTKLRPVHN GDSREEKKNT TLVISKEAKM PMLDNSNWGN  240
KRKMTTMVPH KAKKLRTSDK DEKAGSYDRK KTIRGNTGQR VQSGLKEDKK VKFAFSKVIQ  300
NKHFMEFLLI PPDVAEAPKM VGLTNRHVCL EDSEGKSSIV RLSEVDGSLA FCQGWDNFVS  360
DHSIKWAEML VFEYTGCSKF SVRVFGVNSW ERVSFSLERR GEEKKQKESD HAPNDLVPFH  420
TVGSSRDIDD HHYSSGEYIG SKRPKAKSGG YTDNAVVSPG NLVAKSMNAV PGARRMSANS  480
TQDPSGVVGG IVRGSSMAPE NKDGYSANGK HTANTIFSSY SRGTTRTPET TAIPDEAPLA  540
QENEDMVALD NKELKFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199115KKRIHNHSGDHKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18435.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196102.10.0B3 domain-containing protein Os02g0598200-like
RefseqXP_020196103.10.0B3 domain-containing protein Os02g0598200-like
TrEMBLM0V5130.0M0V513_HORVV; Uncharacterized protein
STRINGMLOC_18435.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-06B3 family protein