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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_17549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 209aa MW: 23084.4 Da PI: 10.1434 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.8 | 1.6e-07 | 27 | 76 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++e E+ RR+r++ e+L +l+Pk ++++ ++ L A YIk+L MLOC_17549.1 27 KKESEKERRQRMKALCEKLTSLIPKEHNPHADTMTQQGSLDVAASYIKKL 76 6899*********************7567777799999**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.89 | 22 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-9 | 27 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.16E-4 | 27 | 80 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.4E-11 | 27 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-5 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0021 | 28 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEVKAKPARG GKRTRAGVPT ATALMEKKES EKERRQRMKA LCEKLTSLIP KEHNPHADTM 60 TQQGSLDVAA SYIKKLKERV DELQRKKTSV QAMATLRGVS SISTPTTTTT TSSGAGSLEG 120 EKYLDASPTI VEVRQPNDSS MEVRLICSTE KQIKLHEVIT IHEEEGADIV NANHSVAGHK 180 IFYTIHSRAF STRIGMDVSR ITERLKALV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 86 | KLKERVDELQRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_17549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-125 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183665.1 | 1e-126 | uncharacterized protein LOC109769324 | ||||
TrEMBL | A0A287JUW4 | 1e-150 | A0A287JUW4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_17549.1 | 1e-152 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10585.1 | 3e-14 | bHLH family protein |