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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_17446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C3H | ||||||||
Protein Properties | Length: 145aa MW: 16429.4 Da PI: 8.0364 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.4e-11 | 107 | 132 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f++rt tCky ++CkF H++ MLOC_17446.1 107 GEKECAFYMRTRTCKYEETCKFDHPQ 132 7899********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.127 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 106 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-9 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-4 | 111 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MSGYPFYPYG RGGVGDDAAA RYSSYEIDLI AARYAGDPSP YPYPYPSASG EFDTHVGARR 60 PADVLYHRPI MGSHSTIGQS DDFYSPNTMA KRPRLESSLP IYPQRPGEKE CAFYMRTRTC 120 KYEETCKFDH PQWVPKGGIP KWKEV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_17446.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251631 | 0.0 | AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200958.1 | 7e-88 | zinc finger CCCH domain-containing protein 8 isoform X1 | ||||
Refseq | XP_020200959.1 | 2e-88 | zinc finger CCCH domain-containing protein 8 isoform X2 | ||||
Swissprot | Q5ZDJ6 | 4e-52 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A287L3F1 | 1e-100 | A0A287L3F1_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287L3F2 | 2e-99 | A0A287L3F2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287L3F3 | 1e-101 | A0A287L3F3_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287L3F6 | 1e-99 | A0A287L3F6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287L3F7 | 1e-100 | A0A287L3F7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_17446.1 | 1e-103 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-33 | floral homeotic protein (HUA1) |
Publications ? help Back to Top | |||
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