PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_17061.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 175aa    MW: 19037.2 Da    PI: 10.5348
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_17061.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.7e-1771107135
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C++Cgt    Tp++Rrgp+g++tLCnaCGl+++ kg+
  MLOC_17061.3  71 CHHCGTNAhnTPMMRRGPEGPRTLCNACGLMWANKGM 107
                   ******9999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062032.2E-14138IPR010402CCT domain
PROSITE profilePS5101712.481138IPR010402CCT domain
SMARTSM004016.2E-1365118IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.11765122IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-1269126No hitNo description
Gene3DG3DSA:3.30.50.108.3E-1670111IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.89E-1470113No hitNo description
PROSITE patternPS0034407198IPR000679Zinc finger, GATA-type
PfamPF003201.2E-1471106IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRFREKRKER NFDKKIRYTV RKEVALRMQR NRGQFTSSKP KPDEGTSELA TADGSPNWGS  60
VEGRPPSAAA CHHCGTNAHN TPMMRRGPEG PRTLCNACGL MWANKGMLRD LAKSTPQSLQ  120
MMATAPNDSN GNTLSQQNGN ALSQQNGNAA IVPFAEQQTL AQATDANGHS HGSST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_17061.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631601e-172AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192766.11e-117GATA transcription factor 20-like isoform X2
RefseqXP_020192768.11e-117GATA transcription factor 20-like isoform X4
SwissprotQ5Z4U52e-77GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A287XHS11e-125A0A287XHS1_HORVV; Uncharacterized protein
STRINGMLOC_17061.41e-127(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-49ZIM-LIKE 2