 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MLOC_16981.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
MYB |
| Protein Properties |
Length: 341aa MW: 37755.4 Da PI: 6.5437 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_16981.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+lv++++ +G g+W+ ++++ g+ R++k+c++rw +yl
MLOC_16981.1 14 RGLWSPEEDEKLVRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
788*******************************************97 PP
|
| 2 | Myb_DNA-binding | 56.7 | 5.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr+T+eE++l++ +++ G++ W+ Ia++++ gRt++++k++w+++
MLOC_16981.1 67 RGRFTPEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
89********************.*********.************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLVRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60
LRPDIRRGRF TPEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKAP 120
AAPNVTTTSS TTSTSPPNNG LAPCSGSTAT SDVHHRRLQH PTFSCAPAGD HLQLDAIISH 180
HQSTSLALPV AAGQDSPPGM SHHCPLFMFD AGVVSTPFAS ASAQQHPFIA SFTAAMAEAD 240
TPSCYHLPPL VDGMGAMGMC MEAMDDHCSA GAGMGNVCFG DEQRQRRRPE LEEEEREQLG 300
QHEQWDEEQL LMWDDQEVLT PSNMEAIQNG AHSLLFMGPN A
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK111808 | 1e-149 | AK111808.1 Oryza sativa Japonica Group cDNA clone:J013114D05, full insert sequence. |
| GenBank | AK112117 | 1e-149 | AK112117.1 Oryza sativa Japonica Group cDNA clone:002-129-C03, full insert sequence. |
