PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16609.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 279aa    MW: 30666.2 Da    PI: 6.3155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16609.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09115162455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+  Er RR+ri +++  L++l+P +    +k   Ka iL + ++Y++sLq
  MLOC_16609.3 115 SHSLSERVRRERISERMRMLQSLVPGC----DKVTGKALILDEIINYVQSLQ 162
                   799***********************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-17109178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-11109166No hitNo description
PROSITE profilePS5088815.65111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-17111176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6115162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-10117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FLLCHGNPED AAAAASREGS SVVLDTPLVA TASMEKKRKP  60
KEDTTASLNS AHSKETKEST RKRGGKKQDK ETAEEEEEPK GYIHVRARRG QATDSHSLSE  120
RVRRERISER MRMLQSLVPG CDKVTGKALI LDEIINYVQS LQNQVEFLSM RIASLSPVVY  180
GFGMESEAAF SDQSHKIEGM FHEAAALPTD PPMNRSSSPA PSQAMMDTVT SSSSPPYSLQ  240
GTQDNGSSSS SYMMQTVGEP RHELFNQVVF SNYMCSFQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16609.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654680.0AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166246.10.0transcription factor bHLH137-like
TrEMBLM0V0Z80.0M0V0Z8_HORVV; Uncharacterized protein
STRINGMLOC_16609.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-37bHLH family protein