PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_16609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24474.7 Da PI: 7.1456 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.6e-10 | 115 | 162 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ Er RR+ri +++ L++l+P + +k Ka iL + ++Y++sLq MLOC_16609.1 115 SHSLSERVRRERISERMRMLQSLVPGC----DKVTGKALILDEIINYVQSLQ 162 799***********************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.10E-11 | 109 | 166 | No hit | No description |
SuperFamily | SSF47459 | 8.77E-18 | 109 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.65 | 111 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-17 | 111 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-7 | 115 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-10 | 117 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAGFSHLPQQ MEYGLTNAGS FLLCHGNPED AAAAASREGS SVVLDTPLVA TASMEKKRKP 60 KEDTTASLNS AHSKETKEST RKRGGKKQDK ETAEEEEEPK GYIHVRARRG QATDSHSLSE 120 RVRRERISER MRMLQSLVPG CDKVTGKALI LDEIINYVQS LQNQVEFLSM RIASLSPVVY 180 GFGMESEAAF SDQSHVWANQ YAQIVYITIV MAIYFSLPFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_16609.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365468 | 0.0 | AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166246.1 | 1e-123 | transcription factor bHLH137-like | ||||
Swissprot | Q93W88 | 2e-50 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | M0V0Z6 | 1e-163 | M0V0Z6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_16609.3 | 1e-142 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 9e-38 | bHLH family protein |
Publications ? help Back to Top | |||
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