PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16480.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 429aa    MW: 48243.6 Da    PI: 7.3147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16480.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.4e-14341141097
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +k++ +++p++  ++    ++ s t++l  ++gr ++v ++     g+ vl++GW  Fv a++++e+D+++F ++g+s+f   +++f
  MLOC_16480.2  34 DFKNC-IRIPRELSTHLR--SRISDTIKLDVPNGRAYDVVVS--WEFGELVLRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 114
                   45565.99****974444..45888****************5..555679***************************9999..66666 PP
2B346.56.5e-152062861096
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   + k + + +p + + +h +++++s  ++le ++g+ ++v+   +k+s+  +vl++GW  Fv an+++ +D ++F+    s+++ ++k+
  MLOC_16480.2 206 NVKDCSINIPLRLV-SHFKEETCSAVIKLEAPDGNIYNVRA--SKHSEDqVVLQSGWDAFVAANHIQKNDLLIFH----SKGKIRLKI 286
                   56778999*****9.6767789*******************..7777777*************************....445455544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.55E-1722119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.51924117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-1727119IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.002327117IPR003340B3 DNA binding domain
CDDcd100171.24E-1435115No hitNo description
PfamPF023626.3E-1235115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-15188293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-16191299IPR015300DNA-binding pseudobarrel domain
CDDcd100175.64E-16194307No hitNo description
PROSITE profilePS5086310.109197292IPR003340B3 DNA binding domain
SMARTSM010190.0019199292IPR003340B3 DNA binding domain
PfamPF023624.4E-12206284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNEDCESCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNCIR IPRELSTHLR SRISDTIKLD  60
VPNGRAYDVV VSWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE  120
KMASCFQPPS EIFGAFPPGE PCDHHVLHEQ AAPNAGHVQT QLEFDYTMSI GCNLTKSQDE  180
KVLEIARKIR SEIPLYVAIM KKINVNVKDC SINIPLRLVS HFKEETCSAV IKLEAPDGNI  240
YNVRASKHSE DQVVLQSGWD AFVAANHIQK NDLLIFHSKG KIRLKILALD PSGHEKNPSC  300
FDMKIFSKTG EGSVRIPDAR PRTVEVIDLT SSDDDHTERE DAGRSTGRRK KVPGSHAKAR  360
KMAPASSPST KSGSDTHKLK LPISNNDNLQ GPSRPPYILA RGITLTGRVE KKVQEKVQAI  420
GSEVLSMWQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0V0P20.0M0V0P2_HORVV; Uncharacterized protein
STRINGMLOC_16480.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1636348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-23B3 family protein