PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15725.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 285aa    MW: 31872.9 Da    PI: 8.4203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15725.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-1668163294
                   EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   +k+l +sd +++gr+vlpkk  e++       ++ ++ l++ d ++ ++W++k++y  +++s++yvl+ ++ ++v+ ++L++gDf++++ d++ + +
  MLOC_15725.2  68 QKELRNSDISQLGRIVLPKKESEAYlptlA--SKDGRSLRMHDlLNAQEWTFKYRYwpNNNSRMYVLE-NTGDYVRTHNLRVGDFIMIYKDDD-NNR 160
                   79999**********************553..556778*****8888*********89999999***9.********************5554.333 PP

                   .EE CS
            B3  92 lvv 94 
                   +v+
  MLOC_15725.2 161 FVI 163
                   344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.00E-2366167No hitNo description
Gene3DG3DSA:2.40.330.101.1E-2366168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-1866163IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-1267169IPR003340B3 DNA binding domain
PROSITE profilePS508639.91167169IPR003340B3 DNA binding domain
PfamPF023621.6E-1268163IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAAISSSKRR SPSASTAASS SSADGIGEPG PQLVTRKRRS VRRGPRGGVR WMPAIRPHQV  60
PGLRVILQKE LRNSDISQLG RIVLPKKESE AYLPTLASKD GRSLRMHDLL NAQEWTFKYR  120
YWPNNNSRMY VLENTGDYVR THNLRVGDFI MIYKDDDNNR FVIRAKKAGD DLVAAMPQFH  180
EHISGILPIP EVDDYVSLIP SPADISAFIP QADENYEIFD GIFNSLPEIP VANVRYSDFF  240
DPFSDCMDAS NPSLNGNNSA NLASHFHDER TGLSLFPNPK SGPLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-43631711109B3 domain-containing transcription factor FUS3
6j9b_D2e-43631711109B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439TRKRRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15725.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4188380.0AM418838.1 Hordeum vulgare subsp. vulgare mRNA for FUSCA3 (fus3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179453.11e-163B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-117LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A287LGD70.0A0A287LGD7_HORVV; Uncharacterized protein
TrEMBLB1V8R30.0B1V8R3_HORVV; FUSCA3
STRINGMLOC_15725.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]