PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15014.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 685aa    MW: 75006.3 Da    PI: 6.7846
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15014.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-201772156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  MLOC_15014.2 17 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMHLSRELGLEPRQIKFWFQNRRTQMK 72
                  678899***********************************************998 PP
2START162.53.2e-512104342206
                   HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                   +a +a++el+++a+a+e +Wvk +   e +n d++ ++f++ ++        ++e +r+s +v  ++  lv +++d++ +W+e ++    +a t++v
  MLOC_15014.2 210 MATRAMDELIRLAQAGEHLWVKTAggrEVLNVDTYDSIFAKPGSssfrgpdVHVEGSRDSCLVLTTAIGLVDTFMDSS-KWTEFFPtvvtRARTIDV 305
                   57899**********************99999999999987766899*******************************.*******9********** PP

                   ECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
         START  85 issg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                   + +g     + l+lm+ el ++sp+vp R+f f+Ry+rq ++g w+i+dvSvd +++    ++ +R+++lpSg+li ++sng+skvtwveh++ +++
  MLOC_15014.2 306 LVNGmagrsESLVLMYEELHVMSPVVPtREFCFLRYCRQIEQGLWAIADVSVDLQRDARYGAPPARSRRLPSGCLIADMSNGYSKVTWVEHMETEDK 402
                   *********************************************************988************************************* PP

                   XX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         START 176 lp.hwllrslvksglaegaktwvatlqrqcek 206
                   +p  +l+r lv sg+a+ga +w+a+lqr ce+
  MLOC_15014.2 403 TPiNQLYRDLVLSGAAFGAHRWLAALQRACER 434
                   ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-20774IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-221279IPR009057Homeodomain-like
PROSITE profilePS5007117.7181474IPR001356Homeobox domain
SMARTSM003891.1E-191578IPR001356Homeobox domain
CDDcd000862.00E-191675No hitNo description
PfamPF000463.8E-181772IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PROSITE profilePS5084847.538200437IPR002913START domain
SuperFamilySSF559612.57E-32201435No hitNo description
CDDcd088752.98E-106204433No hitNo description
SMARTSM002341.1E-39209434IPR002913START domain
PfamPF018528.5E-44210434IPR002913START domain
Gene3DG3DSA:3.30.530.204.8E-5320400IPR023393START-like domain
SuperFamilySSF559613.93E-18452675No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MDFGDDLAPG SDAHRRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRMHLS RELGLEPRQI  60
KFWFQNRRTQ MKAQHERADN CFLRAENDKI RCENIAMREA LKNVICPTCG GPHSGADDYF  120
DEHKLRMENA HLKEELDRVS SLTSKYLGRP ITQLPSMQPL SMSSLELSVG GLGSPVALGP  180
ALDLDTLGGS SPFQLPAPVS DMERPMMAEM ATRAMDELIR LAQAGEHLWV KTAGGREVLN  240
VDTYDSIFAK PGSSSFRGPD VHVEGSRDSC LVLTTAIGLV DTFMDSSKWT EFFPTVVTRA  300
RTIDVLVNGM AGRSESLVLM YEELHVMSPV VPTREFCFLR YCRQIEQGLW AIADVSVDLQ  360
RDARYGAPPA RSRRLPSGCL IADMSNGYSK VTWVEHMETE DKTPINQLYR DLVLSGAAFG  420
AHRWLAALQR ACERHACLVT PPHRDIAGVT LEGKRSMMRL SQRMVGSFCA SLSASQQHRW  480
TTLSGPGAGV DEAAGVRVMV HRSTDPGQPS GVVLSAATSI WLPVPCDRVF AFVRDENTRS  540
QWDVLSHGNP VQEVSRIPNG SHPGNSISLL RGLNASQNSM LILQESCADA SGSLVVYAPI  600
DLPAANVVMS GEDPSAIPLL PSGFTILPDG RASSSGSVVT VAFQILVSSL PSSRLNAESV  660
ATVNSLIGTT VEQIKAALNC GGSSH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15014.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766540.0AK376654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3130F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186741.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLF2EKH70.0F2EKH7_HORVV; Predicted protein
STRINGMLOC_15014.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11