PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14983.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 737aa    MW: 77534.1 Da    PI: 4.3484
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14983.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058622647123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   ++C   +C+++F+ +++L  H ++ +
  MLOC_14983.3 622 FECDidYCHMTFKKRDELSLHKKNmC 647
                   89*******************99866 PP
2zf-C2H212.80.00035647669323
                   ET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                   C+   Cgk+F+++ +L+rH++ H
  MLOC_14983.3 647 CTikSCGKHFRSHKYLRRHQSIH 669
                   77779***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035529622644IPR015880Zinc finger, C2H2-like
SMARTSM003550.46645669IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.235645674IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-7646669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280647669IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-11661703No hitNo description
Gene3DG3DSA:3.30.160.602.8E-13670697IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.817675704IPR007087Zinc finger, C2H2
SMARTSM003550.0015675699IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280677699IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-8692728No hitNo description
Gene3DG3DSA:3.30.160.603.9E-10698727IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035527705727IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MEGALVADEA AAEQEVGVAT PLVDGSYTEP EVTGGASLVS GLITETQVIN GVCLADEAVA  60
ERVSLVSGSI DEPEVISGAA LANVAVAETE VSAGLCFVSE AAIEAADVAT TSGVTTGAPL  120
DNKGVADPDT EMGAPTIHES ASKAASEAAD VAIVSEVTTG APLDNKGVTE PDIKMGASPV  180
DESASEAATE AAYVVTSPEV TTGAPLDNQR VAEPDIKMGA SPVNECAAKT ATEAADVVTN  240
LRVTTVASFV NRGVVEPNIK MEASPAKESA AEMDFVHPGF LVTEAATHPG LPERVSLANE  300
AVAEREVSEA GSLVSEPAAE AAGVVTVLEV TTGTPLDSEG TAEPETKIGP SFANESTAEM  360
DSVLLGSLVT EATTHPGLIG RVSLVTETGV TGAANLDTEV SMEPEDTGRP SLINESTELE  420
ITRGVSIATD AATEPEVTRR ASARSGDSDA ALNEPDTLDC DLDSVSVQIE NAGESVATEV  480
QPSRDDGGDV VGSVNAMSTC PVTDKGPAFD EATPQDDAPS VSCVSGLVVR SVGKSGRTDV  540
ICYARRRGKR KLDMEETTTD QLEMGDGDIY GQCEEKATFD ITVPYESAMS TAGSADIKLA  600
DIKRGLVDNS ASSKGKKRKG RFECDIDYCH MTFKKRDELS LHKKNMCTIK SCGKHFRSHK  660
YLRRHQSIHN EERPYKCPWE GCGMAFKWTW ALADHFEVHT GEKPYKCRTP GCSKIYKYVS  720
DFTRHRRRCK PQRRKTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-4362273623137Lysine-specific demethylase REF6
6a58_A1e-4362273623137Lysine-specific demethylase REF6
6a59_A1e-4362273623137Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1544550RRRGKRK
2544551RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14983.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197869.10.0uncharacterized protein LOC109783681 isoform X2
RefseqXP_020197870.10.0uncharacterized protein LOC109783681 isoform X3
TrEMBLM7Z0090.0M7Z009_TRIUA; Metal regulatory transcription factor 1
STRINGMLOC_14983.80.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-36relative of early flowering 6