PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14821.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 297aa    MW: 31286.6 Da    PI: 4.944
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14821.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-3074132259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp++v itY+ eHnh+
  MLOC_14821.1  74 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSQADPDTVLITYSYEHNHS 132
                   69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.17168134IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-3070133IPR003657WRKY domain
SuperFamilySSF1182901.83E-2571132IPR003657WRKY domain
SMARTSM007741.5E-3673133IPR003657WRKY domain
PfamPF031062.9E-2575131IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDGEWSDGAA SGGEQKASGD GVSADCNSPG SPSPPAVPST SGRRRSLQKR VVTVPLADLN  60
VPRPKGVGEG NTPTDSWAWR KYGQKPIKGS PFPRAYYRCS SSKGCPARKQ VERSQADPDT  120
VLITYSYEHN HSSTAARVQS RPTPKPGKLE RPLPSPEPAK SDDTDTHHGT ANVAGGLVTE  180
SPAAPAIEVH DDFRWLYDVV SVTSSTSPSQ VEAADDMLLY GPMFFGKAAV DTAALLPDEF  240
GGEAVCREGS EEDDAMFAGL GELPECAIVF RRHAGDGLSA MAGGVKVEQP AEGTAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-1849131676Disease resistance protein RRS1
5w3x_D4e-1849131676Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14821.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568230.0AK356823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1040G05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149507.11e-175probable WRKY transcription factor 65
TrEMBLM0UVY20.0M0UVY2_HORVV; Uncharacterized protein
STRINGMLOC_14821.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-44WRKY DNA-binding protein 65