PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14584.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 1083aa    MW: 120278 Da    PI: 6.4273
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14584.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.8e-20130231199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++   W++++i+r++++r++lt+GW+ F + ++L +gD+v+F   ++ +++
  MLOC_14584.1 130 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDTIWTFRHIFRGQPKRHLLTTGWSLFISGKRLIAGDSVLFI--RDAKQQ 223
                   99*****************************9777665.49************************************************..456777 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++++r+
  MLOC_14584.1 224 LLLGIRRA 231
                   89999997 PP
2Auxin_resp118.46e-39256339183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++
  MLOC_14584.1 256 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 339
                   79**********************************9********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-41119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-38122245IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-17129219No hitNo description
PfamPF023622.2E-18130231IPR003340B3 DNA binding domain
SMARTSM010196.8E-19130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166130232IPR003340B3 DNA binding domain
PfamPF065071.4E-33256339IPR010525Auxin response factor
PfamPF023093.4E-99621055IPR033389AUX/IAA domain
PROSITE profilePS5174526.7659701054IPR000270PB1 domain
SuperFamilySSF542772.26E-79741049No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MAAPEGSGAG GGEGPRGSRV NQELWYACAG PLVALPPPGS LVVYFPQGHS EQVAASMRKD  60
ADAQIPSYPN LPSKLICILH SVTMQSDPET DEVYARMTLQ PVSNVTQCDK EILLASELAL  120
KQNKPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPRLD FSLQPPAQEL QARDLHDTIW  180
TFRHIFRGQP KRHLLTTGWS LFISGKRLIA GDSVLFIRDA KQQLLLGIRR ANRQPTNLSS  240
SVLSSDSMHI GVLAAAAHAA ANNSQFTIFY NPRASPSEFV IPFAKYQKAV YGNQLSLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNIQV AWDEAAPSER RTRVSLWDIE  360
PVIAPFFIYP TPLFTAKRAR QPGMIDDDTS GMDNLFKRTM PWLGEEICKK DMNTQNSIVP  420
GLNLAQSVQW MNMQQNLSLA GTVMQPELLN SLAGKHVQNL SAADISRQIS FQPQFLQQNN  480
IQFDTSLLPQ QNQQAEQLAK AIATPNQLEN IMAPQKVDQD CYSDQKQRAV TQTVQGSQAN  540
LNITQPEHVV QAQFEQPQVI LQAQLQQQQP LVQSHTIFQG GLQEIQVLQQ QQQPQHHQQV  600
QHSVQEQQQM KIRPVHVPSD ANMNTQLSSD HQMKLQLLKA LHSQQHLTME QQKMLFDLQQ  660
QVINSQSNPQ QRVQGATQTV GFHNSNTIQY ATQQKAQSHQ PIEGSPGGTI PVAKSDTITS  720
IGASSLNVTS RMQLVRTDNV PSSSTSPSTT TNPVLLHSIP SSSKNQSLPT AAKTSQSSVG  780
LGSTIEQEMK HYQSVKPTIM IPKMIEQGPA TERDYINNPH MDYLDTSSSA TSVCLSQADG  840
SLQQNFPSSS FDQHQLLRDT APDSEFEISD PTNNLLFGVN IDGQLGLPLN ADALLANSIE  900
NDKFMDEMAG NGISNYISSK DSQQELSSSM ISHSLGVADM GFNSIDSATN DPPFLNRNSR  960
APAPAHQRMR TYTKVHKRGA VGRSIDMNRY SGYDELKHDI ARMFGIEGQL GDQSRVGWKL  1020
VYEDHEKDVL LVGDDPWEDF LNCVRCIRIL SPQEEMQMRL VGDFGDGFLP NQACSSSDGG  1080
QPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641436045388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14584.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151212.10.0auxin response factor 21-like
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLF2EEN70.0F2EEN7_HORVV; Auxin response factor
STRINGMLOC_14584.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]