PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_138.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 319aa    MW: 34603.4 Da    PI: 9.6577
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_138.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32150203255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MLOC_138.2 150 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 203
                 9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.31E-15147204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-29148204IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23150204IPR006447Myb domain, plants
PfamPF002491.9E-7151202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELFPRQPDL ALQISTTSSS SSPPAAPPGS WGRPPDAATG AGTMDHFGHH LGFLRADNAG  60
KDGTPPSPWT PPPPSAAGYS NHISNHYHHR MNALLKPIRG VPIYHHHPSF QQLQHQHMAM  120
AYRSSGVSGG GGFLSSRSRF PPGRRSVRAP RMRWTTTLHA RFVHAVELLG GHERATPKSV  180
LELMDVKDLT LAHVKSHLQM YRTIKSTDKP MTSPAGEISD ESLPEALNTH RATDQNGTSA  240
NSHSSSSYNN GGLWSNSSSR VGWPAFGTNS TENRGQCHKE ADASKSLELS AEMNLSCISD  300
QTSSPPVPNL EFTLGRTHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-16151205458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-16151205458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-16151205357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-16151205357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-16151205357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-16151205357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-16151205458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-16151205458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-16151205458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-16151205458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-16151205458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-16151205458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_138.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016682e-47FP101668.1 Phyllostachys edulis cDNA clone: bphyst006o10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157570.10.0probable transcription factor KAN2 isoform X1
TrEMBLA0A453MPC00.0A0A453MPC0_AEGTS; Uncharacterized protein
STRINGMLOC_138.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.15e-37G2-like family protein