PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13459.2
Common NameBBR
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family BBR-BPC
Protein Properties Length: 350aa    MW: 38978.2 Da    PI: 10.2524
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13459.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind345.89.9e-10613501301
     GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.......rernlalsekkaavaerd..................maflqrdkalae 69 
                   mdddgs + rn+g+ye     k nlglqlm s++   rd+k+        ++++  +++ +++++rd                  m+f++++++++ 
  MLOC_13459.2   1 MDDDGSLSiRNWGFYETM---KGNLGLQLMPSVTggHRDTKPllpngtfLQHHTPPHHPPHSHHPRDygngepsggmpaeppaihMDFVRNEAWMHP 94 
                   9**************965...************9999*****999999966777789999999********************************98 PP

     GAGA_bind  70 .....rnkalverdnkllalllvensla................................salpvgvqvlsgtksidslqqlsepqledsavelree 129
                        ++++ ++++++  + l      +                                +++p+g +++++++ +++lq+     ++++  ++++e
  MLOC_13459.2  95 sqhqhQHQHQHQHQHQHQHQL------QhqhqhqhsrelkvlnavpvgpaphighpghavHHHPTGFGMMPDARGAHTLQM-----MQPQEPPVPDE 180
                   433221111122222222222......222334467789999999999999999999999999999999999999999999.....66667777788 PP

     GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226
                   ek++ + +e+ ++++  k+ +kkrq++++pk++k kk+kk  +++ ++ +++   +rs+ + k +++v+ng+++D+s++P+PvCsCtGa++qCY+WG
  MLOC_13459.2 181 EKITPPLVED-HSVVGSKPPVKKRQQGRQPKVPKPKKPKK-DATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISRIPTPVCSCTGAPQQCYRWG 275
                   8777666655.667777778888*****************.556667777777779***************************************** PP

     GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                   +GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
  MLOC_13459.2 276 AGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 350
                   **************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.0E-1691350IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-1171350IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDDDGSLSIR NWGFYETMKG NLGLQLMPSV TGGHRDTKPL LPNGTFLQHH TPPHHPPHSH  60
HPRDYGNGEP SGGMPAEPPA IHMDFVRNEA WMHPSQHQHQ HQHQHQHQHQ HQHQLQHQHQ  120
HQHSRELKVL NAVPVGPAPH IGHPGHAVHH HPTGFGMMPD ARGAHTLQMM QPQEPPVPDE  180
EKITPPLVED HSVVGSKPPV KKRQQGRQPK VPKPKKPKKD ATPGEDGAPK ARAPRSRGPL  240
KPVEMVINGI DFDISRIPTP VCSCTGAPQQ CYRWGAGGWQ SACCTTSIST YPLPMNTKRR  300
GARIAGRKMS QGAFKKVLEK LAGEGYNLNN PIDLKTFWAK HGTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13459.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5072140.0AJ507214.1 Hordeum vulgare bbr gene for barley B recombinant.
GenBankAK3726720.0AK372672.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008N24.
GenBankAK3763890.0AK376389.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165863.10.0protein Barley B recombinant
SwissprotQ8GUC30.0BBR_HORVU; Protein Barley B recombinant
TrEMBLF2E9470.0F2E947_HORVV; Predicted protein
STRINGMLOC_13459.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.14e-63basic pentacysteine 3
Publications ? help Back to Top
  1. Santi L, et al.
    The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
    Plant J., 2003. 34(6): p. 813-26
    [PMID:12795701]