PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13438.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 248aa    MW: 24994.3 Da    PI: 8.497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13438.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-124994555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  MLOC_13438.2 49 HSIAERLRRERIAERMKALQELVPNA-----NKTDKATMLDEIIDYVKFLQ 94
                  99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.84E-144298No hitNo description
SuperFamilySSF474592.62E-1742104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.1744493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1746103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-94994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-135099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MPSQTFGGVG GAPGGGSQPQ QQAGGGGGGA PAPPRQRVRA RRGQATDPHS IAERLRRERI  60
AERMKALQEL VPNANKTDKA TMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS  120
EGRGGAADGS DGLTVTEQQV AKLMEEDMGA AMQYLQGKGL CLMPVSLASA ISSATCQLRP  180
PAAAAGGPFT AAQHMSAAMR MGVGDGGVPA SPSMSVLTAQ SAMANGGGAC ANDGEGSHPK  240
DAASVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13438.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620761e-152BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279381e-152KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146637.11e-137transcription factor bHLH66-like isoform X1
RefseqXP_020146638.11e-137transcription factor bHLH66-like isoform X2
SwissprotQ8S3D52e-78BH069_ARATH; Transcription factor bHLH69
SwissprotQ9ZUG94e-78BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A453KXF71e-139A0A453KXF7_AEGTS; Uncharacterized protein
STRINGMLOC_13438.21e-176(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-51LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]