PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13375.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 665aa    MW: 73331.6 Da    PI: 7.4581
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13375.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.51.7e-163589256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  r+ ++++++q+++Le +F  + +p++++r  L++++gL+ +qVk+WFqN+R+ +k
  MLOC_13375.1 35 RRLQRLNPQQTQVLEGFFSICAHPDENQRMGLSESTGLSMQQVKFWFQNKRTYMK 89
                  6667899********************************************9887 PP
2START1004.3e-321833983205
                   HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.......EEEEEE CS
         START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.......kaetle 83 
                    + a+ e+v + +++ p+W+ ++    + +n+ ++ q+f    +     +++ea ra g+v m++ + v  ++d+  +++  ++         ++++
  MLOC_13375.1 183 VQNAMHEFVVLSESGGPLWMPVPggslDLLNKVVYAQTFGARSSanaigFRVEATRADGMVMMEAKQIVDYIMDSE-CYTSFCPgtltsakTTKIYK 278
                   67899*******************99999**********66555999*******************9999999999.****9999999443333334 PP

                   EECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
         START  84 vissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     + +    ga +lm+ae++++splvp R+ +fvR++r ++ g+ +ivdvS+d+ +       + ++++ pSg+li+++    s+vt++ehv ++++
  MLOC_13375.1 279 WPT-NagynGAMHLMTAETVFPSPLVPsRKCTFVRCCRGMQNGTVIIVDVSLDNGDGT-----FFKCRKMPSGLLIRSLNSDASQVTVIEHVQVNDA 369
                   444.359************************************************994.....89******************************** PP

                   XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
         START 176 lphwllrslvksglaegaktwvatlqrqce 205
                    +h+l+r+++ sgl++ga++w++  +rq +
  MLOC_13375.1 370 GVHELYRPTL-SGLMFGARRWLSSIERQSA 398
                   *********9.699********99998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-172085IPR009057Homeodomain-like
SuperFamilySSF466895.85E-162791IPR009057Homeodomain-like
PROSITE profilePS5007114.9163191IPR001356Homeobox domain
SMARTSM003892.4E-143395IPR001356Homeobox domain
CDDcd000861.40E-143490No hitNo description
PfamPF000463.9E-143589IPR001356Homeobox domain
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PROSITE profilePS5084823.158172402IPR002913START domain
SuperFamilySSF559618.52E-17177396No hitNo description
CDDcd088757.45E-72179398No hitNo description
SMARTSM002347.6E-11181399IPR002913START domain
PfamPF018521.2E-24183397IPR002913START domain
SuperFamilySSF559612.61E-9440624No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MPWSQQGRRA RDNELDIPQS NSDGHDGAEG SQPKRRLQRL NPQQTQVLEG FFSICAHPDE  60
NQRMGLSEST GLSMQQVKFW FQNKRTYMKH LTGKEESYRM KAQNEMLREE NKRLASAAKA  120
SFCPSCVALP GQNPSVEVQR LKEENESLRQ QVSQLRAEAH QLDPSTVNII GRENDIDAIA  180
ELVQNAMHEF VVLSESGGPL WMPVPGGSLD LLNKVVYAQT FGARSSANAI GFRVEATRAD  240
GMVMMEAKQI VDYIMDSECY TSFCPGTLTS AKTTKIYKWP TNAGYNGAMH LMTAETVFPS  300
PLVPSRKCTF VRCCRGMQNG TVIIVDVSLD NGDGTFFKCR KMPSGLLIRS LNSDASQVTV  360
IEHVQVNDAG VHELYRPTLS GLMFGARRWL SSIERQSARM RDLFLLTQST SAANMNGRKT  420
LMKIADDLLA GYANGIAAVP GGGWTILRGA GTEDDIRVTY RRKDDDDDTA VVSVCAAFRL  480
PLPLRMAFDL LRNIQLRPKW DVLVNGNSVR EEVAVCKGVG GFDDVVSILH IKHNAENNEN  540
IMILQNSGYD VSGAFMIYCP VDIQLMNEIM SPSDMGESNK VSLYPTGFSL LPVDDSALGL  600
GEGGATLVTA GYQILLKLAR GTGLYPRSVS TAVSLMTENI ATIKKTLTNS HPIFYKKRQS  660
PNNLG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3320370.0JF332037.1 Triticum aestivum HD-Zip IV transcription factor GL9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164122.10.0homeobox-leucine zipper protein TF1-like
SwissprotQ5ZAY00.0TF1_ORYSJ; Homeobox-leucine zipper protein TF1
TrEMBLM0UR690.0M0UR69_HORVV; Uncharacterized protein
STRINGMLOC_13375.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-114protodermal factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]