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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_13305.1 |
Common Name | RAF |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
ERF |
Protein Properties |
Length: 328aa MW: 35039.1 Da PI: 5.8765 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_13305.1 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 111 | 158 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+G+r+++ +g+W+AeIrdp + +r++lg+f+ta++Aa+a++ a+++l+g
MLOC_13305.1 111 HGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTADDAARAYDVAARRLRG 158
7******.**********72....35*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MCGGAILAQL IPPSAGRPSK QAAAGGRAPP TSSKKGGVSK SRHSSTPDAD DDVFEAAFED 60 FDDHFDLRAE EDGGDDHVVF ASKPAFSPRP AYDGGRAAHA ASRKKRTGHL HGIRQRPWGK 120 WAAEIRDPHK GTRVWLGTFD TADDAARAYD VAARRLRGSK AKVNFPDAAR TGARPRRASR 180 RTAQKPQCPP ARTTAYSATA AARAQPEQDA MMVKPELMEF FNVDAIVHLT TAVAALPPVT 240 ASTFADTMPR VDEDSSVGSG GGAMLGFADE LGFDPFMMFQ LPCSDMYESA DSIFAGDAVI 300 PDALSVDSGM DAVSLWSFDE FPMDSAIF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ102383 | 0.0 | DQ102383.2 Hordeum vulgare root abundant factor (RAF) mRNA, complete cds. |